scRNA-seq

CellRank for directed single-cell fate mapping
Computational trajectory inference enables the reconstruction of cell state dynamics from single-cell RNA sequencing experiments. …
Marius Lange, Volker Bergen, Michal Klein, Manu Setty, Bernhard Reuter, Mostafa Bakhti, Heiko Lickert, Meshal Ansari, Janine Schniering, Herbert B Schiller, Dana Pe’er, Fabian J Theis
Code DOI
CellRank for directed single-cell fate mapping
Alveolar regeneration through a Krt8+ transitional stem cell state that persists in human lung fibrosis
The cell type specific sequences of transcriptional programs during lung regeneration have remained elusive. Using time-series single …
Maximilian Strunz, Lukas M Simon, Meshal Ansari, Jaymin J Kathiriya, Ilias Angelidis, Christoph H Mayr, George Tsidiridis, Marius Lange, Laura F Mattner, Min Yee, Paulina Ogar, Arunima Sengupta, Igor Kukhtevich, Robert Schneider, Zhongming Zhao, Carola Voss, Tobias Stoeger, Jens HL Neumann, Anne Hilgendorff, Jürgen Behr, Michael O’Reilly, Mareike Lehmann, Gerald Burgstaller, Melanie Königshoff, Harold A Chapman, Fabian J Theis, Herbert B Schiller
DOI
Alveolar regeneration through a Krt8+ transitional stem cell state that persists in human lung fibrosis