Software

Hey everyone! 👋 Bridging the gap between different single-cell datasets has always been challenging. Today I’m excited to unveil CellMapper, a high-performance tool that makes this a bit easier through optimized k-NN transfer.

For those of you working on SLURM clusters who struggle with running hyperparameter sweeps, I’ve released a small utility package called slurm_sweep that might save you some time and effort.

Tired of manually annotating cell types in your single-cell datasets? I’m thrilled to announce CellAnnotator, a new tool that harnesses the power of large language models to automate one of the most time-consuming steps in scRNA-seq analysis.